Samtools sort: failed to read header from

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Samtools sort: failed to read header from

「Samtools sort: failed to read header from」文章包含有:「Samtoolsfailedtoreadheaderofsamfile·Issue#1774」、「[main」、「[main」、「WhyIgettheerrorfailtoreadtheheaderfrom"」、「NextflowError」、「SAMTOOLSfailedtoreadheaderfrom"」、「samtoolssort」、「samtoolserror([main」、「HISAT2errorfailedtoreadheaderfrom"」、「SAMtoBAM-」

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Samtools indexSamtools SAM to BAMSamtools sort 用法Samtools installSamtools index: failed to create index forSamtools coverageSamtools flagstatSamtools manualSamtools viewSamtools depthSamtools index BAMSamtools sortSamtools fastqSamtools sort: failed to read header fromSamtools markdup
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Samtools failed to read header of sam file · Issue #1774
Samtools failed to read header of sam file · Issue #1774

https://github.com

Hello, I have been struggling with running samtools because the program can not read the header of my sam file so i get the following error: ...

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[main
[main

https://www.biostars.org

Hi all, I get the following error when reading the sample.bam. The file was converted from sam to bam using the following command: samtools ...

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[main
[main

https://www.biostars.org

I am attempting to run a file through an algorithm I have been using, HLA*LA. On running the samtools command within the algorithm, I have ...

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Why I get the error fail to read the header from "
Why I get the error fail to read the header from "

https://stackoverflow.com

Samtools is just complaining about a missing input file: [main_samview] fail to read the header from -. The problem is that bwa mem is ...

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Nextflow Error
Nextflow Error

https://bioinformatics.stackex

This is not a Nextflow error. The problem is that without an input file, samtools sort tries to read from stdin. Using a recent samtools ...

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SAMTOOLS failed to read header from "
SAMTOOLS failed to read header from "

https://www.reddit.com

The samtools error is likely because it is receiving no output from the bwa mem command. Try running the bwa mem command by itself, and see if ...

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samtools sort
samtools sort

https://blog.csdn.net

取决于SAMtools(http://samtools.sourceforge.net/)和BAMtools(https://github.com/pezmaster31/bamtools)。 也使用BioPerl,它包含在下载的tarball中 ...

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samtools error ([main
samtools error ([main

https://github.com

bam is empty, and so I think this causes the issue for the samtools sort command. Any idea what could be causing this? @4aabeb37-0ae5-4289-ab27- ...

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HISAT2 error failed to read header from "
HISAT2 error failed to read header from "

https://help.galaxyproject.org

Hello today i was using HiSAT2 to fo a mapping of my fastq paired-end secuences to the reference genome of my organism (Hydractinia ...

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SAM to BAM -
SAM to BAM -

https://www.seqanswers.com

i use -t to indicate that the sam file contains tab delimiter, and no header. what could be the issue? Thanks a lot. Attached Files. Capture ...